iAMP-DL: Short Antimicrobial Peptides Prediction using Deep Neural Network constructed by CNN and LSTM

User Manual

To use the online web-server, please follow these steps below:

Step 1: Enter short peptides sequences in FASTA format, maximum 10 sequences each time. The number of amino acids in each sequences must be between 5 and 30, truncated if more than 30 aa. Each sequence must be in one line.
Step 2: Click Submit and wait for the results (approximately 30 seconds per sequence). Results are provided in CSV format. To save the results to a CSV file, copy and paste it into a TEXT file on your computer.

Examples:

Input:
>30_136
ILPIRSLIKKLL
>5_30_768
VNPIILGVLPKFVCLITKKC
>30_63
AIGPVADLHI
>30_115
APVPGLSPFRVV

Results:

Name,Sequence,Classification,Probability
>30_136,ILPIRSLIKKLL,AMP,0.8774
>5_30_768,VNPIILGVLPKFVCLITKKC,AMP,0.8214
>30_63,AIGPVADLHI,Non AMP,0.2106
>30_115,APVPGLSPFRVV,Non AMP,0.3082

Notice

If you have more short peptides for prediction or screening in a long sequences, you are recommended to contact us for support.